Shopify allows you to set up multiple Fulfillment Locations, and keeps track of separate inventory counts in each location. You can configure this in Shopify's Settings / Locations:

A screenshot showing the 'Locations' section in Shopify's Settings. Two locations are highlighted on this page, and there's an annotation that reads 'Pirate Ship can only import orders from one Shopify location as a time, which can be selected in Settings, Integrations.'

Pirate Ship currently only displays orders from one Fulfillment Location at a time, so you'll want to select whichever location has your orders in it. This can be configured in Pirate Ship's Settings / Integrations:

A screenshot showing the Integration Settings for a Shopify Integration on Pirate Ship. In the section titled 'Select your Fulfillment Location,' there is a drop down menu with on of the Shopify store's locations. There's an arrow pointing at this with an annotation reading, 'Select the location that has the orders you want to ship.'

This is not to be confused with your Ship From addresses in Pirate Ship. You can edit or add as many Ship From Addresses as you want in Pirate Ship's Settings / Ship From Addresses.

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